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Results: 1-18 |
Results: 18
Some theoretical and computational aspects of the inclusion of proton isomerism in the protonation equilibrium of proteins
Authors: Baptista, AM Soares, CM
Citation: Am. Baptista et Cm. Soares, Some theoretical and computational aspects of the inclusion of proton isomerism in the protonation equilibrium of proteins, J PHYS CH B, 105(1), 2001, pp. 293-309
[NiFe] hydrogenase from Desulfovibrio desulfuricans ATCC 27774: gene sequencing, three-dimensional structure determination and refinement at 1.8 angstrom and modelling studies of its interaction with the tetrahaem cytochromec(3)
Authors: Matias, PM Soares, CM Saraiva, LM Coelho, R Morais, J Le Gall, J Carrondo, MA
Citation: Pm. Matias et al., [NiFe] hydrogenase from Desulfovibrio desulfuricans ATCC 27774: gene sequencing, three-dimensional structure determination and refinement at 1.8 angstrom and modelling studies of its interaction with the tetrahaem cytochromec(3), J BIOL I CH, 6(1), 2001, pp. 63-81
Conformational component in the coupled transfer of multiple electrons andprotons in a monomeric tetraheme cytochrome
Authors: Louro, RO Bento, I Matias, PM Catarino, T Baptista, AM Soares, CM Carrondo, MA Turner, DL Xavier, AV
Citation: Ro. Louro et al., Conformational component in the coupled transfer of multiple electrons andprotons in a monomeric tetraheme cytochrome, J BIOL CHEM, 276(47), 2001, pp. 44044-44051
The mechanism of superoxide scavenging by Archaeoglobus fulgidus neelaredoxin
Authors: Abreu, IA Saraiva, LM Soares, CM Teixeira, M Cabelli, DE
Citation: Ia. Abreu et al., The mechanism of superoxide scavenging by Archaeoglobus fulgidus neelaredoxin, J BIOL CHEM, 276(42), 2001, pp. 38995-39001
Gene cluster of Rhodothermus marinus high-potential iron-sulfur protein : oxygen oxidoreductase, a caa(3)-type oxidase belonging to the superfamily of heme-copper oxidases
Authors: Santana, M Pereira, MM Elias, NP Soares, CM Teixeira, M
Citation: M. Santana et al., Gene cluster of Rhodothermus marinus high-potential iron-sulfur protein : oxygen oxidoreductase, a caa(3)-type oxidase belonging to the superfamily of heme-copper oxidases, J BACT, 183(2), 2001, pp. 687-699
Incorporating knowledge-based biases into an energy-based side-chain modeling method: Application to comparative modeling of protein structure
Authors: Mendes, J Nagarajaram, HA Soares, CM Blundell, TL Carrondo, MA Hampapathalu, A
Citation: J. Mendes et al., Incorporating knowledge-based biases into an energy-based side-chain modeling method: Application to comparative modeling of protein structure, BIOPOLYMERS, 59(2), 2001, pp. 72-86
Ionic strength dependence of the non-physiological electron transfer between flavodoxin and cytochrome c(553) from D-vulgaris
Authors: Sadeghi, SJ Valetti, F Cunha, CA Romao, MJ Soares, CM Gilardi, G
Citation: Sj. Sadeghi et al., Ionic strength dependence of the non-physiological electron transfer between flavodoxin and cytochrome c(553) from D-vulgaris, J BIOL I CH, 5(6), 2000, pp. 730-737
Evolution of the thyroid hormone-binding protein, transthyretin
Authors: Power, DM Elias, NP Richardson, SJ Mendes, J Soares, CM Santos, CRA
Citation: Dm. Power et al., Evolution of the thyroid hormone-binding protein, transthyretin, GEN C ENDOC, 119(3), 2000, pp. 241-255
Local water bridges and protein conformational stability
Authors: Petukhov, M Cregut, D Soares, CM Serrano, L
Citation: M. Petukhov et al., Local water bridges and protein conformational stability, PROTEIN SCI, 8(10), 1999, pp. 1982-1989
Nine-haem cytochrome c from Desulfovibrio desulfuricans ATCC 27774: primary sequence determination, crystallographic refinement at 1.8 and modelling studies of its interaction with the tetrahaem cytochrome c(3)
Authors: Matias, PM Saraiva, LM Soares, CM Coelho, AV LeGall, J Carrondo, MA
Citation: Pm. Matias et al., Nine-haem cytochrome c from Desulfovibrio desulfuricans ATCC 27774: primary sequence determination, crystallographic refinement at 1.8 and modelling studies of its interaction with the tetrahaem cytochrome c(3), J BIOL I CH, 4(4), 1999, pp. 478-494
Effects of protein-protein interactions on electron transfer: docking and electron transfer calculations for complexes between flavodoxin and c-type cytochromes
Authors: Cunha, CA Romao, MJ Sadeghi, SJ Valetti, F Gilardi, G Soares, CM
Citation: Ca. Cunha et al., Effects of protein-protein interactions on electron transfer: docking and electron transfer calculations for complexes between flavodoxin and c-type cytochromes, J BIOL I CH, 4(3), 1999, pp. 360-374
Comparative redox and pKa calculations on cytochrome c3 from several Desulfovibrio species using continuum electrostatic methods
Authors: Martel, PJ Soares, CM Baptista, AM Fuxreiter, M Naray-Szabo, G Louro, RO Carrondo, MA
Citation: Pj. Martel et al., Comparative redox and pKa calculations on cytochrome c3 from several Desulfovibrio species using continuum electrostatic methods, J BIOL I CH, 4(1), 1999, pp. 73-86
Improved modeling of side-chains in proteins with rotamer-based methods: Aflexible rotamer model
Authors: Mendes, J Baptista, AM Carrondo, MA Soares, CM
Citation: J. Mendes et al., Improved modeling of side-chains in proteins with rotamer-based methods: Aflexible rotamer model, PROTEINS, 37(4), 1999, pp. 530-543
An iterative structure-assisted approach to sequence alignment and comparative modeling
Authors: Burke, DF Deane, CM Nagarajaram, HA Campillo, N Martin-Martinez, M Mendes, J Molina, F Perry, J Reddy, BVB Soares, CM Steward, RE Williams, M Carrondo, MA Blundell, TL Mizuguchi, K
Citation: Df. Burke et al., An iterative structure-assisted approach to sequence alignment and comparative modeling, PROTEINS, 1999, pp. 55-60
Crystal structure of cardosin A, a glycosylated and Arg-Gly-Asp-containingaspartic proteinase from the flowers of Cynara cardunculus L.
Authors: Frazao, C Bento, I Costa, J Soares, CM Verissimo, P Faro, C Pires, E Cooper, J Carrondo, MA
Citation: C. Frazao et al., Crystal structure of cardosin A, a glycosylated and Arg-Gly-Asp-containingaspartic proteinase from the flowers of Cynara cardunculus L., J BIOL CHEM, 274(39), 1999, pp. 27694-27701
Improvement of side-chain modeling in proteins with the self-consistent mean field theory method based on an analysis of the factors influencing prediction
Authors: Mendes, J Soares, CM Carrondo, MA
Citation: J. Mendes et al., Improvement of side-chain modeling in proteins with the self-consistent mean field theory method based on an analysis of the factors influencing prediction, BIOPOLYMERS, 50(2), 1999, pp. 111-131
Simulation of electron-proton coupling with a Monte Carlo method: Application to cytochrome c(3) using continuum electrostatics
Authors: Baptista, AM Martel, PJ Soares, CM
Citation: Am. Baptista et al., Simulation of electron-proton coupling with a Monte Carlo method: Application to cytochrome c(3) using continuum electrostatics, BIOPHYS J, 76(6), 1999, pp. 2978-2998
The caa(3) terminal oxidase of the thermohalophilic bacterium Rhodothermusmarinus: a HiPIP : oxygen oxidoreductase lacking the key glutamate of the D-channel
Authors: Pereira, MM Santana, M Soares, CM Mendes, J Carita, JN Fernandes, AS Saraste, M Carrondo, MA Teixeira, M
Citation: Mm. Pereira et al., The caa(3) terminal oxidase of the thermohalophilic bacterium Rhodothermusmarinus: a HiPIP : oxygen oxidoreductase lacking the key glutamate of the D-channel, BBA-BIOENER, 1413(1), 1999, pp. 1-13
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