Y-chromosomal microsatellites have been investigated for the purposes
of application to male identification, population genetics and populat
ion history. With nine markers, every male in a German population samp
le (n = 70) could be identified by an individual-specific Y microsatel
lite haplotype. The analysis of 474 unrelated males of nine human popu
lations with seven markers revealed 301 different Y haplotypes. The an
alysis of molecular variance (AMOVA) approach was used to detect male
population characteristics of Y microsatellite haplotypes. With pairwi
se comparisons of inter-population variance, most of the populations c
ould be distinguished significantly. Sixty individuals from different
male populations in Asia and Northern Europe carrying a novel Y-chromo
somal T-->C transition show reduced microsatellite variability togethe
r with haplotype similarities. Microsatellite data suggest that the mu
tation occurred recently in Asia, supporting the hypothesis of Asian a
ncestry of some northern European populations.