Radial microscale distributions of oxygen and pH were studied in ca 1.
5 mm large laboratory-made aggregates composed of phytoplankton detrit
us and fecal pellets. Microsensor measurements were done at spatial in
crements down to 0.05 mm in a vertical flow system in which the indivi
dual aggregates stabilized their position in the water phase according
to the upward flow velocity. The aggregates were surrounded by a diff
usive boundary layer with steep gradients of oxygen and pH. They were
highly heterotrophic communities both under natural light conditions a
nd in darkness. pH was lowered from 8.2 in the surrounding water to 7.
4 in the center of an anoxic aggregate. Sulfide was not detectable by
use of sulfide microelectrodes in anoxic aggregates, and methanogenic
bacteria could not be detected after PCR (polymerase chain reaction) a
mplification using archaebacterial-specific primers. The oxygen respir
ation rate decreased exponentially over time with a T-1/2 of 2.3 d. Th
eoretical calculations of the volumetric oxygen respiration rate neede
d to deplete oxygen inside aggregates was compared to the density of o
rganic matter in natural marine aggregates. These calculations showed
that carbon limitation of heterotrophic processes would limit anoxic c
onditions to occurring only over a few hours, depending on the size of
the aggregates. Therefore slow-growing obligate anaerobic microorgani
sms such as sulfate reducing bacteria and methanogenic bacteria may be
limited by the relatively short persistence of anoxia in marine aggre
gates.