Position effect variegation of most Drosophila melanogaster genes, inc
luding the white eye pigment gene, is recessive. We find that this is
not always the case for white transgenes. Three examples are described
in which a lesion causing variegation is capable of silencing the whi
te transgene on the paired homologue (trans-inactivation). These examp
les include two different transgene constructs inserted at three disti
nct genomic locations. The lesions that cause variegation of white min
imally disrupt the linear order of genes on the chromosomes, permittin
g close homologous pairing. At one of these sites, trans-inactivation
has also been extended to include a vital gene in the vicinity of the
white transgene insertion. These findings suggest that many Drosophila
genes, in many positions in the genome, can sense the heterochromatic
state of a paired homologue.