Thermal factors of protein atoms as determined by X-ray crystallograph
ic techniques show a tendency to be larger in side chains with unfavou
rable local conformations rather than in those displaying conformation
al energy minima. It follows that side chain atoms are more mobile if
they are in a non-rotameric configuration and that the stereochemistry
of protein structures cannot be fully assessed or simulated without c
onsideration of thermal factors that monitor flexibility in various re
gions of the protein. The observations should also prove useful in pro
tein folding and design.