The Philadelphia (Ph) chromosome is present in the leukaemic cells of
most patients with chronic myelogenous leukaemia. Variant translocatio
ns occur in 10% of patients but breakpoints on chromosomes 9 and 22 re
main the same, so prognosis of these patients is unchanged. Clonal evo
lution is infrequent in chronic phase and its significance depends on
the specific chromosome involved, the number of metaphases affected an
d the timing in the chronic phase. The majority of patients in blastic
phase demonstrate clonal evolution; three specific abnormalities (+Ph
, +8 and isochromosome 17q) are present in 70% of patients. Loss of th
e Ph chromosome on therapy is associated with prolonged survival. For
monitoring these events conventional G-band cytogenetics (CG) is essen
tial at presentation to characterize the disease cytogenetically, whil
e fluorescence in situ hybridization (FISH) on hypermetaphase preparat
ions (hypermetaphase FISH (HMF)) is important for establishing the spe
cific frequency of Ph+ cells. During treatment FISH on interphase cell
s (I-FISH) can monitor the level of Ph+ cells in circulation, while CG
may be used to identify any suspected clonal evolution. Where I-FISH
is negative, HMF is essential to evaluate minimal residual disease.