Ef. Modafferi et Dl. Black, A COMPLEX INTRONIC SPLICING ENHANCER FROM THE C-SRC PRE-MESSENGER-RNAACTIVATES INCLUSION OF A HETEROLOGOUS EXON, Molecular and cellular biology, 17(11), 1997, pp. 6537-6545
The mouse c-src gene contains a short neuron-specific exon, N1. To cha
racterize the sequences that regulate N1 splicing, we used a heterolog
ous gene, derived from the human beta-globin gene, containing a short
internal exon that is usually skipped by the splicing machinery. Vario
us fragments from the src gene were inserted into the globin substrate
to measure their effects on the splicing of the test exon, These clon
es were transiently expressed in neuronal and nonneuronal cell lines,
and the level of exon inclusion was measured by primer extension. Seve
ral sequences from the N1 exon region induced the splicing of the hete
rologous exon, The most powerful effect was seen with a sequence from
the intron downstream of the N1 exon. This sequence acted as a strong
splicing enhancer, activating splicing of the test exon when placed in
the intron downstream. The enhancer was strongest in neuronal LA-N-5
cells but also activated splicing in nonneuronal HEK293 cells. Deletio
n and linker scanning mutagenesis indicate that the enhancer is made n
p of multiple smaller elements that must act in combination, One of th
ese elements was identified as the sequence UGCAUG, Three copies of th
is element can strongly activate splicing of the test exon in LA-N-5 n
euroblastoma cells. These component elements of the src splicing enhan
cer are also apparently involved in the spicing of other short cassett
e exons.