We have used scanning force microscopy and transmission electron micro
scopy to study the microphase separation of P(S-b-2VP) block copolymer
s on chemically structured substrates. Gold was patterned by microcont
act printing to form regions of self-assembled alkyl monolayers termin
ated by -CH3 Or -OH. The differences in surface and interfacial energi
es between the coexisting phases and the boundary surfaces strongly in
fluence the resulting domain structure. We find that excess material a
ccumulates only on layers formed above the H3C-terminated SAM. For thi
s to happen, single block copolymer molecules diffuse over distances o
f several micrometers. TEM investigations reveal that the block copoly
mer is well ordered into lamellae parallel to the substrate over the H
O-terminated SAM but that the block copolymer layers on the H3C-termin
ated SAM are frequently oriented perpendicular to the substrate. This
perpendicular orientation could decrease the edge free energy of the i
slands that form on this layer.