H. Akashi et al., SEQUENCE DETERMINATION AND PHYLOGENETIC ANALYSIS OF THE AKABANE BUNYAVIRUS S-RNA GENOME SEGMENT, Journal of General Virology, 78, 1997, pp. 2847-2851
The nucleotide sequence of the small (5) RNA segment of Akabane (AKA)
bunyavirus was determined. The segment is 858 nucleotides long and con
tains two overlapping open reading frames (ORFs), which encode the nuc
leocapsid (N) and nonstructural (NSs) proteins, consistent with other
bunyaviruses. Comparisons with the Aino virus S RNA sequence indicated
that there is 73.5% identity in nucleotide sequence. However, the seq
uence identity of the 5' non-coding region of the genomic RNA between
these two viruses is only 55%. The N ORFs from 20 Japanese and 2 Austr
alian isolates of AKA virus were sequenced and subjected to phylogenet
ic analysis. This suggested that AKA virus has evolved in multiple lin
eages. Twenty-three isolates were grouped into three major clusters, a
nd the cluster which includes recent isolates was subdivided into two
branches. Thus, phylogenetic analysis of the AKA virus N protein gene
gives a greater insight into bunyavirus evolution.