S. Antonczak et al., THE HYDROLYSIS MECHANISM OF FORMAMIDE REVISITED - COMPARISON BETWEEN AB-INITIO, SEMIEMPIRICAL AND DFT RESULTS, JOURNAL OF MOLECULAR MODELING, 3(10), 1997, pp. 434-442
The hydrolysis of amides is a model reaction to study peptide hydrolys
is. This process has been previously considered in the literature at t
he ab initio level. In this work, we revisit different reaction mechan
isms (water-assisted, non-assisted, neutral and acid-catalyzed) with v
arious theoretical methods : semiempirical, ab initio and Density Func
tional. The ab initio calculations are carried out at a computational
level which is substantially higher than in previous studies. We descr
ibe the structure of the transition states and discuss the influence o
f the catalyst. We also compute the activation free energies for these
processes at the Density Functional Theory level. Comparison of the m
ethods allows to outline the main trends of these theoretical approach
es which may be useful to design new computational strategies for inve
stigating biological reaction mechanisms through the use of combined Q
uantum Mechanics/Molecular Mechanics methods.