Cp. Pan et al., 3-DIMENSIONAL PHARMACOPHORE HYPOTHESES FOR THE LOCUST NEURONAL OCTOPAMINE RECEPTOR (OAR3) .1. ANTAGONISTS, JOURNAL OF MOLECULAR MODELING, 3(11), 1997, pp. 455-463
Three-dimensional pharmacophore hypotheses were built from a set of 17
mianserin-like antagonists against octopamine receptor class 3 (OAR3)
in locust nervous tissue. Among the ten chemical-featured models gene
rated by program Catalyst/Hypo, three hypotheses were considered to be
important and predictive in evaluating OAR3 antagonists. Predictions
were fairly precise for all molecules but the three outliners includin
g eresepine, metoclopramide and yohimbine. While the ideal and null hy
potheses had a cost of 66.50 and 124.97, respectively, the ten resulti
ng hypotheses possessed costs from 78.96 to 92.04. The best hypothesis
that was confirmed to have a 95% chance of true correlation yielded a
low RMS of 1.05 and high regression r of 0.934. Active antagonists ma
pped well onto all the features of the hypothesis such as hydrophobic,
aromatic ring or positive ionizable features. On the other hand, inac
tive compounds lack of binding affinity were shown to be poorly capabl
e of achieving an energetically favorable conformation shared by the a
ctive molecules in order to fit the 3D chemical feature pharmacophore
models. In addition, from the comparison and conformation analysis it
was proposed that positive ionizable feature contained a lower weight
than hydrophobic or an aromatic ring one. Further research on the comp
arison of models from agonists and antagonists may help elucidate the
mechanisms of OAR3 and other types of octopamine receptor-ligand inter
actions.