3-DIMENSIONAL PHARMACOPHORE HYPOTHESES FOR THE LOCUST NEURONAL OCTOPAMINE RECEPTOR (OAR3) .1. ANTAGONISTS

Citation
Cp. Pan et al., 3-DIMENSIONAL PHARMACOPHORE HYPOTHESES FOR THE LOCUST NEURONAL OCTOPAMINE RECEPTOR (OAR3) .1. ANTAGONISTS, JOURNAL OF MOLECULAR MODELING, 3(11), 1997, pp. 455-463
Citations number
19
Categorie Soggetti
Biophysics,Biology,Chemistry
Journal title
JOURNAL OF MOLECULAR MODELING
ISSN journal
16102940 → ACNP
Volume
3
Issue
11
Year of publication
1997
Pages
455 - 463
Database
ISI
SICI code
1610-2940(1997)3:11<455:3PHFTL>2.0.ZU;2-R
Abstract
Three-dimensional pharmacophore hypotheses were built from a set of 17 mianserin-like antagonists against octopamine receptor class 3 (OAR3) in locust nervous tissue. Among the ten chemical-featured models gene rated by program Catalyst/Hypo, three hypotheses were considered to be important and predictive in evaluating OAR3 antagonists. Predictions were fairly precise for all molecules but the three outliners includin g eresepine, metoclopramide and yohimbine. While the ideal and null hy potheses had a cost of 66.50 and 124.97, respectively, the ten resulti ng hypotheses possessed costs from 78.96 to 92.04. The best hypothesis that was confirmed to have a 95% chance of true correlation yielded a low RMS of 1.05 and high regression r of 0.934. Active antagonists ma pped well onto all the features of the hypothesis such as hydrophobic, aromatic ring or positive ionizable features. On the other hand, inac tive compounds lack of binding affinity were shown to be poorly capabl e of achieving an energetically favorable conformation shared by the a ctive molecules in order to fit the 3D chemical feature pharmacophore models. In addition, from the comparison and conformation analysis it was proposed that positive ionizable feature contained a lower weight than hydrophobic or an aromatic ring one. Further research on the comp arison of models from agonists and antagonists may help elucidate the mechanisms of OAR3 and other types of octopamine receptor-ligand inter actions.