An optimized automated PNA synthesis protocol is reported. Under optim
al conditions the product yield of a test 17-mer PNA is approximately
90 %. The average coupling yield is 99.4 %. The synthesis strategy is
Boc/Z. The protocol is developed in a 5 mu mole scale but is easily sc
aled up to 10 - 50 mu mole scale syntheses on the automated synthesize
r (ABI 433A). DNA capture experiments by PNA was used to develop a met
hod for PNA-mediated purification of genomic Chlamydia DNA from urine.
This purification removed efficiently substances that impeded DNA amp
lification.