We describe the brightfield microscopical detection of multiple DNA ta
rget sequences in cell and tissue preparations. For this purpose, chro
mosome-specific DNA probes labelled with biotin, digoxigenin or fluore
scein were simultaneously hybridised and detected by enzyme cytochemis
try using two horseradish peroxidase (PO) reactions and one alkaline p
hosphatase (APase) reaction. For triple-colour detection on single cel
l preparations, the combination of the enzyme precipitates PO/diaminob
enzidine (DAB, brown colour), APase/fast red (FR, red colour) and PO/t
etramethylbenzidine (TMB, green colour) resulted in an accurate detect
ion of DNA targets. Embedding of the preparations in a thin crosslinke
d protein layer further stabilised the enzyme reaction products. For i
n situ hybridisation on tissue sections, however, this detection proce
dure showed some limitations with respect to both the stability of the
APase/FR and PO/TMB precipitates, and the sequence of immunochemical
layers in multiple-target procedures. For this reason, the APase/FR re
action was replaced by the APase/new fuchsin (NF, red colour) reaction
and the washing steps after the PO/TMB reaction were restricted to th
e use of phosphate buffer pH 6.0. Furthermore, to improve the efficien
cy of the ISH reaction, APase/NF was applied in an avidin-biotin compl
ex detection system and, to avoid target shielding in the triple-targe
t ISH, the third primary antibody was applied prior to the second enzy
me cytochemical reaction. These adaptations resulted in stable, well c
ontrasting brown, red and green coloured precipitates. After quick hae
matoxylin counterstaining, the tissue preparations were directly mount
ed in phosphate buffer and, optionally, embedded in the crosslinked pr
otein layer.