Background: The unfolded protein response (UPR) is an intracellular si
gnaling pathway that is activated by the accumulation of unfolded prot
eins in the endoplasmic reticulum (ER). The UPR results in an increase
in transcription of ER-resident proteins that facilitate protein fold
ing in the ER. A key regulatory step in UPR activation is the regulate
d splicing of HAC1 mRNA, which encodes Hac1p, a transcription factor d
edicated to this pathway. Hac1p can be detected only when the spliced
form of HAC1 mRNA (termed HAC1(i) mRNA, for induced) is produced; this
was surprising because the unspliced HAC1(u) mRNA (HAC1(u) for unindu
ced) is equally stable in cells. Results: We show that in contrast to
most other unspliced pre-mRNAs, the HAC1(u) mRNA is transported from t
he nucleus into the cytosol. Although HAC1(u) mRNA is associated with
polyribosomes, no delectable Hac1p(u) is produced unless the intron is
removed, indicating that the presence of the intron prevents mRNA tra
nslation. When it is produced, Hac1p(u) has a stability similar to tha
t of Hac1p(i), the form of the Hac1p that is produced from the spliced
mRNA and that differs from Hac1p(u) by a short carboxy-terminal tail
sequence. Hac1p(u), however, is differently modified and less active i
n activating transcription. Interestingly, when transplanted into the
3' untranslated region of a completely unrelated mRNA, the HAC1 intron
is sufficient to attenuate translation of the preceding open reading
frame. Conclusions: We have shown that the HAC1 mRNA intron is both ne
cessary and sufficient to prevent complete translation of polyribosome
-associated mRNAs. To our knowledge, this identifies a new way by whic
h translation of a mRNA can be attenuated.