Helicobacter pylori is an extremely diverse species. The characterizat
ion of strains isolated from individual patients should give insights
into colonization and disease mechanisms and bacterial evolution. We s
tudied H. pylori isolates from patients in the Japanese-Peruvian Polyc
linic in Lima, Peru, by determining metronidazole susceptibility or re
sistance and by random amplified polymorphic DNA (RAPD) fingerprinting
(a measure of overall genotype). Strains isolated from several biopsy
specimens from each of 24 patients were studied. Both metronidazole-s
usceptible and -resistant strains were isolated from 13 patients, wher
eas strains of more than one RAPD type were isolated from only seven p
atients. We propose that the homogeneity in RAPD fingerprints for stra
ins isolated from most persons reflects selection for particular H. py
lori genotypes during chronic infection in individual hosts and the hu
man diversity in traits that are important to this pathogen, Carriage
of related metronidazole-resistant and -susceptible strains could refl
ect frequent metronidazole use in Peru and alternating selection for r
esistant and susceptible phenotypes during and after metronidazole the
rapy.