The crystal structure of human cyclin H refined at 2.6 Angstrom resolu
tion is compared with that of cyclin A. The core of the molecule consi
sts of two repeats containing five helices each and forming the canoni
cal cyclin fold also observed in TFIIB. One hundred and thirty-two out
of the 217 C alpha atoms from the cyclin fold can be superposed with
a root-mean-square difference of 1.8 Angstrom. The structural homology
is even higher for the residues at the interface with the kinase, whi
ch is of functional significance, as shown by our observation that cyc
lin H binds to cyclin-dependent kinase 2 (cdk2) and that cyclin A is a
ble to activate cdk7 in the presence of MAT1. Based on this superposit
ion, a new signature sequence for cyclins was found, The specificity o
f the cyclin H molecule is provided mainly by two long helices which e
xtend the cyclin fold at its N- and C-termini and pack together agains
t the first repeat on the side opposite to the kinase. Deletion mutant
s show that the terminal helices are required for a functionally activ
e cyclin H.