PDZ domains are multifunctional protein-interaction motifs that often
bind to the C-terminus of protein targets. Nitric oxide (NO), an endog
enous signaling molecule, plays critical roles in nervous, immune, and
cardiovascular function. Although there are numerous physiological fu
nctions for neuron-derived NO, produced primarily by the neuronal NO s
ynthase (nNOS), excess nNOS activity mediates brain injury in cerebral
ischemia and in animal models of Parkinson's disease. Subcellular loc
alization of nNOS activity must therefore be tightly regulated. To det
ermine ligands for the PDZ domain of nNOS, we screened 13 billion dist
inct peptides and found that the nNOS-PDZ domain binds tightly to pept
ides ending Asp-X-Val. This differs from the only known (Thr/Ser)-X-Va
l consensus that interacts with PDZ domains from PSD-95. Preference fo
r Asp at the -2 peptide position is mediated by Tyr-77 of nNOS. A Y77D
78 to H(77)E(78) substitution changes the binding specificity from Asp
-X-Val to Thr-X-Val. Guided by the Asp-X-Val consensus, candidate nNOS
interacting proteins have been identified including glutamate and mel
atonin receptors. Our results demonstrate that PDZ domains have distin
ct peptide binding specificity.