Sw. Carrigan et al., MM3(96) PARAMETERIZATION FOR CAMPTOTHECIN ANALOGS - AN AB-INITIO AND MOLECULAR MECHANICS STUDY, Journal of computer-aided molecular design, 11(1), 1997, pp. 61-70
Torsional parameters for MM3(96) were derived for the missing atom typ
es present in the natural product camptothecin (CPT). Potential energy
curves were calculated via ab initio calculations on representative c
ompounds for dihedral angles containing these missing parameters. Gaus
sian 92 at the restricted Hartree-Fock level of theory using the stand
ard 6-31G* and 4-31G** basis sets, was used for all the quantum-mecha
nics calculations. Missing MM3 torsional terms were obtained by optimi
zing the V-1, V-2 and V-3 parameters such that MM3 could reproduce the
ab initio torsional profile. MM3 calculated molecular structures that
compare well with the ab initio results. Using the newly developed pa
rameters, conformational analyses and QSAR studies of camptothecin ana
logs were undertaken. MM3 predicts two distinct 'boatlike' conformatio
ns for the alpha-hydroxy lactone moiety. The low-energy lactone confor
mation predicted by MM3 is in general agreement with reported X-ray cr
ystal structures of CPT iodoacetate and 7-ethyl-10-(4-piperidino)piper
idinylcarbonyloxy CPT HCl as well as the ab initio structure of a CPT-
like alpha-hydroxy lactone.