COMPARATIVE MOLECULAR-FIELD ANALYSIS AND MOLECULAR MODELING STUDIES OF 20-(S)-CAMPTOTHECIN ANALOGS AS INHIBITORS OF DNA TOPOISOMERASE-I ANDANTICANCER ANTITUMOR AGENTS/

Conformational studies and comparative molecular field analysis (CoMFA ) were undertaken for a series of camptothecin (CPT) analogs to correl ate topoisomerase I inhibition with the steric and electrostatic prope rties of 32 known compounds. The resulting CoMFA models have been used to make predictions on novel CPT derivatives. Using the newly derived MM3 parameters, a molecular database of the 32 CPT analogs was create d. Various point atomic charges were generated and assigned to the MM3 minimized structures, which were used in partial least-squares analys es. Overall, CoMFA models with the greatest predictive validity were o btained when both the R- and S-isomers were included in the data set, and semiempirical charges were calculated for MM3 minimized low-energy lactone structures. A cross-validated R(2) of 0.758 and a non-cross-v alidated R(2) of 0.916 were obtained for MM3 minimized structures with PM3 ESP charges for the 32 CPT analogs. The derived QSAR equations we re used to assign topoisomerase I inhibition values for compounds in t his study and compounds not included in the original data set. Prior t o its appearance in the literature, an IC50 of 103 nM was predicted fo r the 10,11-oxazole derivative. This CoMFA predicted value compared fa vorably with the recently reported value of 150 nM. The CoMFA model wa s also evaluated by predicting the activities of recently reported 11- aza CPT and trione derivatives. The predicted activity (IC50 = 249 nM) for 11-aza CPT compared well with the reported value of 383 nM.