A. Mitchell et al., PHYLOGENETIC UTILITY OF ELONGATION FACTOR-1-ALPHA IN NOCTUOIDEA (INSECTA, LEPIDOPTERA) - THE LIMITS OF SYNONYMOUS SUBSTITUTION, Molecular biology and evolution, 14(4), 1997, pp. 381-390
To test its phylogenetic utility, nucleotide sequence variation in a 1
,240-bp fragment of the elongation factor-1 alpha (EF-1 alpha) gene wa
s examined in 49 moth species representing the major groups of the sup
erfamily Noctuoidea. Both parsimony and distance analyses supported th
e monophyly of nearly all groups for which there are clear morphologic
al synapomorphies. Clades of subfamily rank and lower, probably mid-Te
rtiary and younger, were strongly supported. The third codon position
contains 88% of variable sites, and approaches saturation at similar t
o 20% sequence divergence, possibly due to among-site rate heterogenei
ty and composition bias; higher divergences occur only in association
with shifts in composition. Surprisingly, the few nonsynonymous change
s appear no more phylogenetically reliable than synonymous changes. Si
gnal strength for basal divergences is weak and fails to improve with
character weighting; thus, dense taxon sampling is probably needed for
strong inference from EF-1 alpha regarding deeper splits in Noctuoide
a (probably early Tertiary). EF-1 alpha synonymous changes show promis
e for phylogeny reconstruction within Noctuidae and other groups of Te
rtiary age.