Patterns of rye rDNA organization in interphase nuclei were studied th
rough the use of in situ hybridization in spreads of root meristem cel
ls from plants with and without B chromosomes (Bs). In cells from plan
ts without Bs each rDNA locus is organized as a single perinucleolar k
nob of condensed chromatin with decondensed chromatin inside the nucle
olus. In plants with Bs there is a marked modification of the pattern,
found in more than 23% of nuclei, which involves several regions of c
ondensed chromatin interspersed with decondensed chromatin inside the
nucleolus. This B-induced alteration in rDNA interphase organization s
uggests a change in expression of the rRNA genes located on the A chro
mosomes probably related to the reduction in nuclear RNA observed prev
iously in plants with Bs. The influence of the Bs on the expression of
A chromosome genes, through rearrangement of interphase chromatin, co
uld provide the basis of an explanation for some of the known phenotyp
ic effects of B chromosomes in rye.