The initiation stage of transcription by RNA polymerase II has long be
en regarded as the primary site for regulation of eukaryotic gene expr
ession, Nevertheless, a growing body of evidence reveals that the RNA
polymerase II elongation complex is also a major target for regulation
. Biochemical studies are implicating an increasing number of transcri
ption factors in the regulation of elongation, and these transcription
factors are being found to function by a diverse collection of mechan
isms. Moreover, unexpected features of the structure and catalytic mec
hanism of RNA polymerase II are forcing a reconsideration of long-held
views on the mechanics of some of the most basic: aspects of polymera
se function, In this review, we will describe recent insights into the
structures and functions of RNA polymerase II and the transcription f
actors that control its activity during the elongation stage of eukary
otic messenger RNA synthesis.