This report reviews the development of a rapid in situ approach to stu
dy the physiological responses of bacteria within biofilms to disinfec
tants. One method utilized direct viable counts (DVC) to assess the di
sinfection efficacy when thin biofilms were exposed to chlorine or mon
ochloramine. Results obtained using the DVC method were one log higher
than plate count (PC) estimates of the surviving population after dis
infection. Other methods incorporated the use of fluorogenic stains, a
cryotomy technique to yield thin (5-mu m) sections of biofilm communi
ties and examination by fluorescence microscopy. The fluorogenic stain
s used in this approach included 5-cyano-2,3-ditolyl tetrazolium chlor
ide (CTC), which indicates cellular electron transport activity and Rh
odamine 123, which responds specifically to proton motive force. The u
se of these stains allowed the microscopic discrimination of physiolog
ically active bacteria as well as heterogeneities of active cells with
in thicker biofilms. The results of experiments using these techniques
with pure culture and binary population biofilms on stainless steel c
oupons indicated biocidal activity of chlorine-based disinfectants occ
urred initially at the bulk-fluid interface of the communities and pro
gressed toward the substratum. This approach provided a unique opportu
nity to describe the spatial response of bacteria within biofilms to a
ntimicrobial agents and address mechanisms explaining their comparativ
e resistance to disinfection in a way that has not been possible using
traditional approaches. Results obtained using this alternative appro
ach were also consistently higher than PC data following disinfection.
These observations suggest that traditional methods involving biofilm
removal and bacterial enumeration by colony formation overestimate bi
ocide efficacy. Hence the alternative approach described here more acc
urately indicates the ability of bacteria surviving disinfection to re
cover and grow as well as demonstrate spatial heterogeneities in cellu
lar physiological activities within biofilms.