A linear 5.2-kb HS2/beta-globin construct with an upstream KpnI termin
us (4-nucleotide (nt) 3' protruding single strand, PSS) and a downstre
am SalI terminus (4-nt 5' PSS) was microinjected into fertilized mouse
eggs. The injected DNA fragments integrated into the mouse genome pri
marily as a head-to-tail tandem array. Chromosome/transgene junctions
were obtained from seven of eight transgenic animals. All of the junct
ions occurred in the proximity of a transgene KpnI end; a maximum loss
of 8 nt from the transgene terminus was observed. Two of these juncti
ons completely preserved the 4-nt KpnI 3' PSS. Transgene/transgene jun
ctions from two animals were analyzed. SalI/KpnI junctions that comple
tely preserved both the SalI 5' PSS and the KpnI 3' PSS were found in
each animal. These are the first examples of complete nt preservation
at junctions formed between a 5' PSS terminus and a 3' PSS terminus in
transgenic mice. The data are consistent with the fill-in model of Th
ode et al. [Cell 60 (1990) 921-928] in which alignment proteins juxtap
ose 5' PSS and 3' PSS termini; DNA polymerase then utilizes the recess
ed 3'-OH of the 5' PSS terminus as a primer to synthesize DNA across t
he gap. This mechanism results in the formation of junctions with no l
oss of sequence. The results described in the present paper suggest th
at this mechanism may be involved in the formation of junctions in tra
nsgenic mice.