Recent advances in the measurement and theory of ''hydration'' interac
tions between biomolecules provide a basis on which to formulate mecha
nisms of biomolecular recognition. In this paper we have developed a m
athematical formalism for analyzing specificity encoded in dynamic dis
tributions of surface polar groups, a formalism that incorporates newl
y recognized properties of directly measured ''hydration'' forces. As
expected, attraction between surfaces requires complementary patterns
of surface polar groups. In contrast to usual expectations, thermal mo
tion can create these complementary surface configurations. We have de
monstrated that assembly can occur with an increase in conformational
entropy of polar residues. Elevated temperature then facilitates recog
nition rather than hinders it. This mechanism might underlie some temp
erature-favored assembly reactions common in biological systems that a
re usually associated with the ''hydrophobic effect'' only. (C) 1994 W
iley-Liss, Inc.