Clonogenic assay is one of the most sensitive assays, widely used to e
valuate the effects of antineoplastic agents in vitro. A computer prog
ram was developed on an IBAS 2.0 Image Analysis System for automated q
uantitation of cell colonies and clone area on Petri dishes. The sensi
tivity of the clonogenic assay can be greatly increased by evaluating
the mean area of the clones. The program gives an objective, accurate
and fast evaluation of large samples. It is simple to use and offers a
high degree of flexibility. Special algorithms and techniques have be
en implemented for good quantitation of both connected and well-separa
ted colonies and to reduce the background noise and the general error
rate. The principles and solutions presented are applicable to any oth
er image analysis system.