The mapping of complex trait loci in mice has recently become very pop
ular thanks to dense genetic maps, better approaches to linkage analys
is and the continued value of the mouse as a key model organism for hu
man disease. Nevertheless, the ultimate goal remains very difficult: t
o identify genes that underlie complex traits and to understand their
function at a molecular level. In assessing the prospects of current e
fforts, it helps to review the findings of earlier studies of complex
traits and, despite all the technology, to be reminded of the inherent
benefits and limitations at the source of genetic variation: the labo
ratory mouse. with the right perspective it should be possible for gen
eticists analysing complex traits to take full advantage of the resour
ces that the genome project will provide.