Analysis of DNA from the fungal component of lichens requires selectiv
e protocols to isolate its DNA from that of its symbiotic partner. In
the present study, we describe a method for extraction of DNA from fun
gal ascomata, a source of algal-free mycelium. This method, which incl
udes a DNA precipitation onto glassmilk (=ground SiO2), is particularl
y useful for limited amounts of starting material, as exemplified by t
he isolation of DNA from ascomata of Arthonia malendoi growing parasit
ically on the lichen Xanthoria elegans. The protocol is effective for
the isolation of high-quality DNA from cultured fungi, herbarium speci
mens and lichens high in polysaccharide content. This new protocol mak
es possible the examination of many fungi until now thought intractabl
e to DNA methods.