BACKGROUND: An isochromosome for the short arm of chromosome 12, i(12p
), is the most common and characteristic cytogenetic aberration in tes
ticular germ cell tumors. Little is known about the molecular genetic
abnormalities of these neoplasms. EXPERIMENTAL DESIGN: A total of 32 l
oci were studied in DNA from 31 primary testicular germ cell tumors an
d compared with corresponding normal DNA. The loci map to 17 different
chromosome arms, including seven that contain known tumor suppressor
genes. Southern blot analysis and PCR-based methods were used. Several
microsatellite loci were included to investigate instability (seen as
new alleles) at repeat loci. The TP53 tumor suppressor gene was analy
zed for point mutations by constant denaturant gel electrophoresis and
for expression by immunohistochemistry. Histologic sections of the tu
mor biopsies were evaluated with regard to components and percentage o
f intact tumor cells. The growth fraction, representing one component
of proliferative activity of the tumor, was assessed by the Ki-67 inde
x. RESULTS: Changes were found at all chromosome arms investigated but
at very different frequencies, 5-56% of all tumors. The most frequent
ly affected chromosome arms, those showing loss of heterozygosity or a
llele imbalance in more than 40% of the tumors, were 2q, 3p, 3q, 11p,
12p, 18q, and 22q. Complete loss of one allele was often seen at 3p an
d 11p loci, whereas allelic imbalances dominated on the 2p, 3q, 12p, 1
8q, and 22q loci tested. No mutations were detected within four known
mutational hot spots of TP53, but positive immunostaining with two TP5
3 Ab was seen in 9 of 14 tumors. Most tumors (26 of 31) showed positiv
e immunostaining with Ki-67. Microsatellite instability was not observ
ed. CONCLUSIONS: High frequencies of loss of heterozygosity and alleli
c imbalance at several loci indicate that inactivation of several tumo
r suppressor genes may be of importance in developing testicular germ
cell tumors. The increase in copynumber of 12p alleles seen in several
tumors is likely to reflect one or more 12p isochromosomes. Our findi
ngs do not indicate that TP53 plays any major pathogenic role in this
tumor type, nor was there any indication that defect repair genes, cau
sing microsatellite instability in other cancers, participate in the p
rogression of testicular cancer.