We have identified an unusual 0.55-kb DNA repeat element specific to E
ntamoeba histolytica (Eh) which we call interspersed element (IE). The
IE is a common feature in independently isolated genomic and cDNA fra
gments. Hybridization of labeled IE sequences to trophozoite DNA, RNA
and first-strand cDNA prepared from poly(A)-enriched mRNA indicate tha
t the IE are reiterated about 500 times per Eh trophozoite and that on
e or more can be found as RNA transcripts. These features and the degr
ee of conservation of IE suggest a possible role for these sequences.