Scots pine (Pinus sylvestris) genomic libraries were constructed and s
creened with oligonucleotide probes (GT)(10),(CT)(10), and (AT)(10). E
ight microsatellites were identified from 6000 clones screened. The lo
ngest microsatellite stretch found (GT)(9)(N)(21)(AT)(24), was amplifi
ed from bud and single pollen grain samples. In order to clarify the c
omplex amplification pattern revealed, two PCR products were sequenced
. The size differences were caused both by varying repeat numbers of t
he microsatellite stretches and by differences in other parts of the a
mplified sequence. This kind of complex molecular basis of microsatell
ite amplification within a species has not been previously reported. M
icrosatellite sequences were used as PCR primers to detect polymorphis
ms and to estimate the abundance of microsatellites.