SARs are candidate DNA elements for defining the bases of chromatin lo
ops and possibly for serving as cis elements of chromosome dynamics. S
ARs contain numerous A tracts, whose altered DNA structure is recogniz
ed by cooperatively interacting proteins such as topoisomerase II. We
constructed multi-AT hook (MATH) proteins and demonstrate that they sp
ecifically bind the clustered A tracts of SARs in chromatin and chromo
somes. They are also potent inhibitors of chromosome assembly in mitot
ic Xenopus extracts, demonstrating the importance of SARs in this proc
ess. Titration of SARs with MATH20 (20 hooks) blocks shape determinati
on of chromatids but not chromatin condensation per se. SARs are also
required for shape maintenance of chromosomes. If MATH20 is added afte
r formation of chromatids, they collapse and are reshaped by an active
, mitotic process into spherical chromatid balls.