The replication initiator (Rep) proteins of geminiviruses perform a DN
A cleavage and strand transfer reaction at the viral origin of replica
tion, As a reaction intermediate, Rep proteins become covalently linke
d to the 5' end of the cleaved DNA, We have used tomato yellow leaf cu
rl virus Rep protein for in vivo and in vitro analyses, Isolating a co
valent peptide-nucleotide complex, we have identified the amino acid o
f Rep which mediates cleavage and links the protein to DNA, We show th
at tyrosine-103, located in a conserved sequence motif, initiates DNA
cleavage and is the physical link between geminivirus Rep protein and
its origin DNA.