We have determined sequences of PCRamplified B1 elements from hamster
and rat (Myomorpha), chipmunk (Sciuromorpha), and guinea pig (Caviomor
pha). Between three and six B1 subfamilies were found in these species
. In the phylogenetic analysis B1 sequences of hamster, mouse, and rat
clustered separately from those of chipmunk and those of guinea pig.
This is consistent with an independent evolution of B1 elements in sep
arate rodent lineages. We exclude the possibility of convergent mutati
ons to explain certain diagnostic characters within the modern B1 quas
i-dimers and view these elements as mosaic structures assembling preex
isting mutations. Furthermore, the presence of Alu-like structural mot
ifs supports the hypothesis of the monophyletic origin of Alu and B1 r
epeats, i.e., from a common 7SL RNA-derived retroposing monomeric elem
ent.