The genetic basis of body weight in the mouse was investigated by meas
uring frequency changes of microsatellite marker alleles in lines dive
rgently selected for body weight from a base population of a cross bet
ween two inbred strains. In several regions of the genome, sharp peaks
of frequency change at linked markers were detected, which suggested
the presence of single genes of moderate effect, although in several o
ther regions, significant frequency changes occurred over large portio
ns of chromosomes. A method based on maximum likelihood was used to in
fer effects and map positions of quantitative trait loci (QTLs) based
on genotype frequencies at one or more marker loci. Eleven QTLs with e
ffects in the range 0.17-0.28 phenotypic standard deviations were dete
cted; but under an additive model, these did not fully account for the
observed selection response. Tests for the presence of more than one
QTL in regions where there were large changes of marker allele frequen
cy were mostly inconclusive.