Over the years the structural properties of nucleic acids have been of
interest, providing data that may be of importance for DNA and RNA or
ganization and function in the cell. We have attempted to look for the
formation of parallel RNA-RNA duplexes in vitro. RNA molecules compri
sing complementary in the same polarity alternating stretches of A and
U of increasing length were enzymatically synthesized and annealed in
physiological conditions. The fractionation in the denaturing polyacr
ylamide gels revealed the formation of two types of full-length parall
el RNase A - stable duplexes established either by A-U or by A-A and U
-U self pairs. These results suggest novel structural properties of ve
rsatile RNA molecules that potentially may be realized in vivo.