The purpose of our study was to develop a method for detecting herpes
simplex virus (HSV) DNA that combined the high sensitivity of the poly
merase chain reaction (PCR) with the precise anatomical localization p
rovided by in situ hybridization (ISH). We used insitu PCR (ISPCR), IS
H, and standard PCR methods to determine the proportion of Vero cells
carrying HSV-1-specific DNA before and after 1, 2, and 4 h of infectio
n with HSV-1 or with HSV-2. Uninfected Vero cells and Vero cells infec
ted with HSV-2 were never found to be positive for HSV-1 DNA by either
ISPCR, ISH, or PCR. In contrast, using ISPCR, HSV-1 infected Vero cel
ls showed an increase in the percentage of cells containing HSV-1 DNA
from 20% at 1 h to 76% at 4 h after infection. Comparing the ISPCR res
ults with ISH and standard PCR demonstrated that ISPCR was markedly mo
re sensitive than ISH; in fact, the sensitivity of in situ PCR was sim
ilar to that seen with standard PCR. These results demonstrate that IS
PCR is a highly sensitive method for amplifying genomic DNA sequences
within intact single cells. This technique combines the exquisite sens
itivity of conventional PCR technology with the precise cellular local
ization afforded by ISH. In addition, it allows for an accurate quanti
tative determination of the number of virally infected cells.