We report the first detailed study on the ubiquinone (coenzyme Q; abbr
eviated to Q) analogue specificity of mitochondrial complex I, NADH:Q
reductase, in intact submitochondrial particles. The enzymic function
of complex I has been investigated using a series of analogues of Q as
electron acceptor substrates for both electron transport activity and
the associated generation of membrane potential. Q analogues with a s
aturated substituent of one to three carbons at position 6 of the 2,3-
dimethoxy-5-methyl-1,4-benzoquinone ring have the fastest rates of ele
ctron transport activity, and analogues with a substituent of seven to
nine carbon atoms have the highest values of association constant der
ived from NADH:Q reductase activity. The rate of NADH:Q reductase acti
vity is potently but incompletely inhibited by rotenone, and the resid
ual rotenone-insensitive rate is stimulated by Q analogues in differen
t ways depending on the hydrophobicity of their substituent. Membrane
potential measurements have been undertaken to evaluate the energetic
efficiency of complex I with various Q analogues. Only hydrophobic ana
logues such as nonyl-Q or undecyl-Q show an efficiency of membrane pot
ential generation equivalent to that of endogenous Q. The less hydroph
obic analogues as well as the isoprenoid analogue Q-2 are more efficie
nt as substrates for the redox activity of complex I than for membrane
potential generation. Thus the hydrophilic Q analogues act also as el
ectron sinks and interact incompletely with the physiological Q site i
n complex I that pumps protons and generates membrane potential.