We conducted genetic analyses to determine the components of variation
for size distributions of apolipoprotein (apo) A-I among human plasma
lipoproteins resolved on the basis of size. Analyses used data for 71
7 individuals in 26 pedigrees. Apo A-I distributions among lipoprotein
size classes were measured by nondenaturing gradient gel electrophore
sis (GGE) and immunoblotting procedures. Curves were fitted to apo A-I
absorbance profiles to estimate fractional absorbance in each of five
high-density lipoprotein (HDL) subclasses. Multivariate regression an
alyses revealed several covariates (sex, age, diabetes, and apo A-I co
ncentrations) that were significantly associated with variation in one
or more HDL subclasses. Female gender and elevated apo A-I concentrat
ions were associated with increases in proportion of apo A-I in larger
HDLs, while increasing age and diabetes were associated with decrease
s. The analyses showed significant heritabilities, h(2), for each vari
able representing the different HDL subclasses. Both genetic and nonge
neric effects on apo A-I size distributions were generally exerted acr
oss the range of lipoprotein sizes, as suggested by high genetic and e
nvironmental correlations between HDL subclass variables. Decompositio
n of total overall variance showed that unidentified environmental fac
tors accounted for 48% of variation in apo A-I size distribution, whil
e genetic factors explained about 36% and the identified covariates ex
plained the remaining 16%. When considered separately, apo A-I concent
ration explained only 5% of the total variation in apo A-I size distri
bution, indicating that apo A-I concentration is a poor predictor of a
po A-I size distribution. In summary, the data suggest that there are
significant genetic and environmental effects on apo A-I size distribu
tion in humans, and that they are general metabolic effects rather tha
n effects on specific HDL subclasses.