H. Polivka et al., VARIATION OF VIROID PROFILES IN INDIVIDUAL GRAPEVINE PLANTS - NOVEL GRAPEVINE YELLOW SPECKLE VIROID-1 MUTANTS SHOW ALTERATIONS OF HAIRPIN-I, Journal of General Virology, 77, 1996, pp. 155-161
This is the first report which gives a general survey about viroid var
iant composition in a vineyard and within single plants. A German vine
yard with 20-year-old grapevines (Vitis vinifera) of the cultivars 'Ba
cchus' and 'Kerner' was analysed for viroid infections. Only grapevine
yellow speckle viroid 1 (GYSVd1) and the grapevine isolate of hop stu
nt viroid (HSVdg) were detected. Both viroids occur in several sequenc
e variations. Eighteen novel GYSVd1 variants and two previously publis
hed HSVdg main variants with six new minor variants were found. They w
ere randomly spread in the vineyard. The distributions of GYSVd1 and H
SVdg main variants and their accompanying subvariants differed even in
neighbouring plants. We conclude that these individual viroid variant
profiles are the result of 20 years of independent evolution, i.e. mu
tation and selection, in each single plant. Four of the nine GYSVd1 ma
in variants were mutated in the inverted repeats bordering the central
conserved region. These base substitutions decreased the thermodynami
c stability of a metastable structure called hairpin I.