Classification trees provide an attractively transparent discriminatio
n technique, and may be derived from both expert opinion and from data
analysis, We consider a real and complex problem concerning the diagn
osis of babies with suspected critical congenital heart disease into o
ne of 27 classes, A full loss matrix for all possible misclassificatio
ns was obtained from clinical assessments. A tree derived from expert
opinion was compared with those derived from analysis of 571 past case
s, both for the full problem and for a subset of 6 diseases. Automatic
methods for tree creation and pruning were found to have problems for
rare diseases, and hand-pruning was carried out. Inclusion of costs l
ed to much improved clinical performance, even for trees that had orig
inally been constructed to minimize classification errors. The expert
tree showed a specific building strategy that could not be reproduced
automatically. The expert tree generally outperformed those derived fr
om data, particularly in the ability to identify important composite f
eatures.