Orotate phosphoribosyltransferase (OPRTase) catalyzes the magnesium-de
pendent conversion of alpha-D-phosphoribosylpyrophosphate (PRPP) and o
rotate to orotidine 5'-monophosphate (OMP) and pyrophosphate. We have
determined kinetic isotope effects on the reaction of OMP with pyropho
sphate and with the pyrophosphate analog phosphonoacetic acid. In the
latter case, full expression of the kinetic isotope effects allowed us
to calculate the structure of the transition state for the pyrophosph
orylytic reaction. The transition state resembles a classical oxocarbo
nium ion. Using the recently reported three-dimensional structures of
the OPRTase-OMP (Scapin et al., 1994) and the OPRTase-PRPP complexes (
Scapin et al., 1995a), we have modeled the calculated transition state
structure into the active site of OPRTase. We propose a detailed chem
ical mechanism which is consistent with these results.