The roles of the 3'- and 5'-terminal nucleotides and the panhandle str
ucture of influenza B virus virion RNA were analyzed in vitro by trans
cription of model RNA templates with influenza B virus RNA polymerase.
The results suggest that the stability of the panhandle and breathing
of the extreme ends of the panhandle are important factors for effici
ent transcription. Influenza B virus polymerase appears to be more tol
erant of mutations in the panhandle structure than influenza A virus p
olymerase. This is consistent with the greater degree of heterogeneity
observed naturally in the 3'-terminal nucleotides of the virion RNA o
f influenza B virus than in influenza A virus.