CORRELATION OF THE HYDROGEN-BOND ACCEPTOR PROPERTIES OF NITROGEN WITHTHE GEOMETRY OF THE NSP(2)-]NSP(3) TRANSITION IN R(1)(X=)C-NR(2)R(3) SUBSTRUCTURES - REACTION PATHWAY FOR THE PROTONATION OF NITROGEN
Fh. Allen et al., CORRELATION OF THE HYDROGEN-BOND ACCEPTOR PROPERTIES OF NITROGEN WITHTHE GEOMETRY OF THE NSP(2)-]NSP(3) TRANSITION IN R(1)(X=)C-NR(2)R(3) SUBSTRUCTURES - REACTION PATHWAY FOR THE PROTONATION OF NITROGEN, Acta crystallographica. Section B, Structural science, 51, 1995, pp. 1068-1081
The non-bonded N ... H interactions between N atoms of R(1)(X =)C-N(R(
2)R(3)) (R(2),R(3) = Csp(3) or H) substructures and the H atoms of N-H
and O-H donors have been analysed using crystallographic data and ab
initio molecular orbital calculations, A total of 946 contacts having
N ... H (d(NH)) 2.75 less than or equal to Angstrom were retrieved fro
m the Cambridge Structural Database, For the preferred all-planar (Nsp
(2)) conformation, d(NH) ranges upwards from ca 2.5 Angstrom and H app
roaches N approximately perpendicular to the plane. However, it is sho
wn that close intramolecular steric interactions lead to major geometr
ical distortions [pyramidalization at N and rotation about the C-N bon
d: Ferretti, Bertolasi, Gilli & Gilli (1993). J. Phys. Chem. 49, 13568
-13574]. The N atom undergoes a transition from sp(2) to sp(3) with gr
adual lone-pair formation on N. If N-pyramidality is measured by chi(N
), (the angle between the C-N vector and the NR(2)R(3) plane), then as
chi(N) increases beyond ca 35 degrees towards the sp(3) value of ca 6
0 degrees the N ... H contacts tend to become significantly shorter (s
tronger), the N ... H donor angle approaches linearity and H approache
s N within a 20 degrees cone that has the assumed N lone-pair vector a
s an axis. A plot of chi(N) versus d(NH) is interpreted as the reactio
n pathway for protonation of N and data points from R(1)(X=)C-N+(R(2)R
(3))H systems (the reaction product) occur at the end of this pathway.
Crystallographic evidence shows that all 153 contacts ( 2.75 Angstrom
that have chi(N) greater than or equal to 35 degrees and a N ... H do
nor angle above 130 degrees are true hydrogen bonds, The evidence also
suggests that the incoming H atoms track the developing N lone-pair d
ensity as lambda(N) increases from ca 35 to 60 degrees. Ab initio mole
cular orbital calculations for aniline (6-31G) basis set) give electr
ostatic potential maps at incremental values of chi(N) (in the range 0
-48.5 degrees) that clearly show the developing N lone-pair density.