CORRELATION OF THE HYDROGEN-BOND ACCEPTOR PROPERTIES OF NITROGEN WITHTHE GEOMETRY OF THE NSP(2)-]NSP(3) TRANSITION IN R(1)(X=)C-NR(2)R(3) SUBSTRUCTURES - REACTION PATHWAY FOR THE PROTONATION OF NITROGEN

Citation
Fh. Allen et al., CORRELATION OF THE HYDROGEN-BOND ACCEPTOR PROPERTIES OF NITROGEN WITHTHE GEOMETRY OF THE NSP(2)-]NSP(3) TRANSITION IN R(1)(X=)C-NR(2)R(3) SUBSTRUCTURES - REACTION PATHWAY FOR THE PROTONATION OF NITROGEN, Acta crystallographica. Section B, Structural science, 51, 1995, pp. 1068-1081
Citations number
26
Categorie Soggetti
Crystallography
ISSN journal
01087681
Volume
51
Year of publication
1995
Part
6
Pages
1068 - 1081
Database
ISI
SICI code
0108-7681(1995)51:<1068:COTHAP>2.0.ZU;2-8
Abstract
The non-bonded N ... H interactions between N atoms of R(1)(X =)C-N(R( 2)R(3)) (R(2),R(3) = Csp(3) or H) substructures and the H atoms of N-H and O-H donors have been analysed using crystallographic data and ab initio molecular orbital calculations, A total of 946 contacts having N ... H (d(NH)) 2.75 less than or equal to Angstrom were retrieved fro m the Cambridge Structural Database, For the preferred all-planar (Nsp (2)) conformation, d(NH) ranges upwards from ca 2.5 Angstrom and H app roaches N approximately perpendicular to the plane. However, it is sho wn that close intramolecular steric interactions lead to major geometr ical distortions [pyramidalization at N and rotation about the C-N bon d: Ferretti, Bertolasi, Gilli & Gilli (1993). J. Phys. Chem. 49, 13568 -13574]. The N atom undergoes a transition from sp(2) to sp(3) with gr adual lone-pair formation on N. If N-pyramidality is measured by chi(N ), (the angle between the C-N vector and the NR(2)R(3) plane), then as chi(N) increases beyond ca 35 degrees towards the sp(3) value of ca 6 0 degrees the N ... H contacts tend to become significantly shorter (s tronger), the N ... H donor angle approaches linearity and H approache s N within a 20 degrees cone that has the assumed N lone-pair vector a s an axis. A plot of chi(N) versus d(NH) is interpreted as the reactio n pathway for protonation of N and data points from R(1)(X=)C-N+(R(2)R (3))H systems (the reaction product) occur at the end of this pathway. Crystallographic evidence shows that all 153 contacts ( 2.75 Angstrom that have chi(N) greater than or equal to 35 degrees and a N ... H do nor angle above 130 degrees are true hydrogen bonds, The evidence also suggests that the incoming H atoms track the developing N lone-pair d ensity as lambda(N) increases from ca 35 to 60 degrees. Ab initio mole cular orbital calculations for aniline (6-31G) basis set) give electr ostatic potential maps at incremental values of chi(N) (in the range 0 -48.5 degrees) that clearly show the developing N lone-pair density.