The correlation between dynamic surface properties of drug molecules a
nd drug absorption in two common in vitro models of the intestinal wal
l (Caco-2 monolayers and rat intestinal segments) has been investigate
d. A homologous series of P-adrenoreceptor antagonists were used as mo
del compounds. Dynamic molecular surface properties, considering all l
ow-energy conformations, of the compounds were calculated. The flexibi
lity of the molecules was studied by molecular mechanics calculations
(MM2) and the van der Waals' (vdW), and water accessible surface areas
were calculated and averaged according to a Boltzmann distribution. E
xcellent correlations were obtained between the dynamic polar vdW surf
ace areas and cell permeabilities in Caco-2 cells and rat ileum (r(2)
= 0.99 and 0.92, respectively). These correlations were stronger than
those between calculated octano/buffer partition coefficients (log D-o
ct,D-7.4) and permeability (r(2) = 0.80 and 0.73, respectively). Moreo
ver, the calculated log D-oct,D-7.4 values failed to rank the permeabi
lity coefficients through Caco-2 monolayers and rat ileum in the corre
ct order. The results indicate that dynamic polar surface area is a pr
omising alternative model for the prediction of oral drug absorption.