The Raman spectra of commercially available heparin disaccharide stand
ards exhibit bands associated with the N-sulfate and the 6-O-sulfate g
roups of the glucosamine and the 2-O-sulfate of the iduronic acid. The
N-sulfate has a strong band at 1039 cm(-1). The 6-O-sulfate and the 2
-O-sulfate exhibit bands at 1055 and 1065 cm(-1), respectively. The pa
ttern of these modes, which are assigned to the symmetric SO3 vibratio
ns, was supported by semiempirical quantum mechanical calculations. Th
e above bands were identified in the Raman spectrum of a commercial pr
eparation of porcine mucosal heparin and were used to determine the re
lative proportion of the N-sulfate, 6-O-sulfate, and 2-O-sulfate group
s in the heparin molecule. This information, which is complementary to
that obtained by NMR spectroscopy, is of particular importance in rel
ation to biological activity. This study also extends the usefulness o
f Raman spectroscopy to include structural details required for the qu
ality assurance of pharmaceutical preparations of heparin.