Each cryptomonad strain contains only a single spectroscopic type of b
iliprotein. These biliproteins are isolated as similar to 50000 kDa al
pha alpha'beta(2) complexes which carry one bilin on the alpha and thr
ee on the beta subunit. Six different bilins are present on the crypto
monad biliproteins, two of which (phycocyanobilin and phycoerythrobili
n) also occur in cyanobacterial and rhodophytan biliproteins, while fo
ur are known only in the cryptomonads. The beta subunit is encoded on
the chloroplast genome, whereas the a subunits are encoded by a small
nuclear multigene family. The beta subunits of all cryptomonad bilipro
teins, regardless of spectroscopic type, have highly conserved amino a
cid sequences, which show > 80% identity with those of rhodophytan phy
coerythrin beta subunits. In contrast, cyanobacteria and red algal chl
oroplasts each contain several spectroscopically distinct biliproteins
organized into macromolecular complexes (phycobilisomes). The data on
biliproteins, as well as several other lines of evidence. indicate th
at the cryptomonad biliprotein antenna system is 'primitive' and anted
ates that of the cyanobacteria. It is proposed that the gene encoding
the cryptomonad biliprotein beta subunit is the ancestral gene of the
gene family encoding cyanobacterial and rhodophytan biliprotein alpha
and beta subunits.