We have developed a simplified method for multiplex PCR based on the u
se of chimeric primers. Each primer contains a 3' region complementary
to sequence-specific recognition sites and a 5' region made up of an
unrelated 20-nucleotide sequence. Identical reaction conditions, cycli
ng times, and annealing temperatures have been established for any PCR
primer pair comprising the chimeric motif. Under these conditions, ef
ficient multiplex amplification is achieved easily and reproducibly by
simple adjustment of the individual primer concentrations. No additio
nal modification of either the reaction components or annealing temper
atures Is required. The use of tagged primers provides a method for pr
imer design that eliminates the multiple optimization steps involved i
n developing multiplex PCR.