The membrane topology of the human Na+/glucose cotransporter SGLT1 has
been probed using N-glycosylation scanning mutants and nested truncat
ions. Functional analysis proved essential for establishment of signal
-anchor topology. The resultant model diverges significantly from prev
iously held suppositions of structure based primarily on hydropathy an
alysis, SGLT1 incorporates 14 membrane spans. The N terminus resides e
xtracellularly, and two hydrophobic regions form newly recognized memb
rane spans 4 and 12; the large charged domain near the C terminus is c
ytoplasmic. This model was evaluated further using two advanced empiri
cally-based algorithms predictive of transmembrane helices. Helix ends
were predicted using thermodynamically-based algorithms known to pred
ict x-ray crystallographically determined transmembrane helix ends. Se
veral considerations suggest the hydrophobic C terminus forms a 14th t
ransmembrane helix, differentiating the eukaryotic members of the SGLT
1 family from bacterial homologues. Our data inferentially indicate th
at these bacterial homologues incorporate 13 spans, with an extracellu
lar N terminus. The model of SGLT1 secondary structure and the predict
ed helix ends signify information prerequisite for the rational design
of further experiments on structure/function relationships.