Spontaneous or background mutation in mammals plays an important role
in both medical and evolutionary contexts. However, establishing mutat
ion frequencies or rates has not always been easy. When the field of m
ammalian mutagenesis was in its infancy, the word ''variant'' rather t
han ''mutant'' was often used because the genetic nature of the observ
ed phenotypic alterations could not be adequately proven. Nowadays num
erous target genes have been identified in which mutant frequencies ca
n be measured, and occasionally even rates can be estimated. Indeed, t
he genetic basis for 'variants' now often comes from direct DNA sequen
cing. This review describes the most often used and best understood ge
netic markers for mutation research and examines their usefulness. In
addition, mutational specificity is compared for several loci and the
use of DNA-sequence data in determining the origins of spontaneous mut
ation is also discussed. An important observation is that spontaneous
mutation frequencies of similarly sized genes can vary by more than an
order of magnitude. Chromosomal location, the nature of the gene prod
uct and mutational specificity may offer a partial explanation.